Pubblicazioni di Paci Paola
2024
Sibilio P., Conte F., Huang Y., Castaldi P. J., Hersh C. P., Demeo D. L., Silverman E. K., Paci P.
2023
Vitiello M., Mercatanti A., Podda M. S., Baldanzi C., Prantera A., Sarti S., Rizzo M., Salvetti A., Conte F., Fiscon G., Paci P., Poliseno L.
Fiscon G., Conte F., Paci P.
A network-based algorithm for identifying drug repurposing opportunities for complex diseases. Convegno Nazionale di Bioingegneria 2023: -
Brunetti M., Paci P., Fiscon G.
A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers. Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 2023: 3626-3631
Sibilio Pasquale, DI GIULIO Stefano, Funari Alessio, Paci Paola, Veschi Veronica, Giannini Giuseppe
A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells. PROCEEDINGS IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE 2023: -
Conte F., Fiscon G., Paci P.
Bioinformatics analyses to identify molecular gene signatures associated with breast cancer phenotypes. Convegno Nazionale di Bioingegneria 2023: -
Fiscon G., Funari A., Paci P.
Vernocchi P., Marangelo C., Guerrera S., Del Chierico F., Guarrasi V., Gardini S., Conte F., Paci P., Ianiro G., Gasbarrini A., Vicari S., Putignani L.
Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors. FRONTIERS IN MICROBIOLOGY 2023: 1287350-
Zulian V., Fiscon G., Paci P., Garbuglia A. R.
Hepatitis B Virus and microRNAs: A Bioinformatics Approach. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 2023: -
Catanzaro Giuseppina, Conte Federica, Trocchianesi Sofia, Splendiani Elena, Bimonte Viviana Maria, Mocini Edoardo, Filardi Tiziana, Po Agnese, Besharat Zein Mersini, Gentile Maria Cristina, Paci Paola, Morano Susanna, Migliaccio Silvia, Ferretti Elisabetta
Funari A., Paci P., Conte F.
Network-based analysis to uncover drug-induced adverse side-effects. Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 2023: 3632-3637
Zulian V., Garbuglia A. R., Fiscon G., Paci P.
Overview of bioinformatic tools to study viral infections. Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 2023: 3669-3675
Pecoraro Martina, Catanzaro Giuseppina, Conte Federica, Besharat ZEIN MERSINI, Messina Emanuele, Laschena Ludovica, Trocchianesi Sofia, Splendiani Elena, Sciarra Alessandro, Catalano Carlo, Paci Paola, Ferretti Elisabetta, Panebianco Valeria
Paci P.
The long story of SWIM methodology: from grapevine to personalised medicine. Proceedings of the 8th National Congress of Bioengineering, GNB 2023 2023: -
2022
Fiscon Giulia, Conte Federica, Farina Lorenzo, Paci Paola
A Comparison of Network-Based Methods for Drug Repurposing along with an Application to Human Complex Diseases. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 2022: 1-15
Petroni Marialaura, Fabretti Francesca, DI GIULIO Stefano, NICOLIS DI ROBILANT Vittoria, LA MONICA Veronica, Moretti Marta, Belardinilli Francesca, Bufalieri Francesca, Coppa Anna, Paci Paola, Corsi Alessandro, DE SMAELE Enrico, Coni Sonia, Canettieri Gianluca, DI MARCOTULLIO Lucia, Zhao‐qi Wang, Giannini Giuseppe
A gene dosage‐dependent effect unveils NBS1 as both a haploinsufficient tumour suppressor and an essential gene for SHH‐medulloblastoma. NEUROPATHOLOGY & APPLIED NEUROBIOLOGY 2022: -
Conte F., Sibilio P., Fiscon G., Paci P.
Conte F., Paci P.
Alzheimer’s disease: insights from a network medicine perspective. SCIENTIFIC REPORTS 2022: -
Sibilio P., Belardinilli F., Licursi V., Paci P., Giannini G.
Paci P., Fiscon G., Conte F., Wang R. -S., Handy D. E., Farina L., Loscalzo J.
Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects. NPJ SYSTEMS BIOLOGY AND APPLICATIONS 2022: 12-
Cipollari S., Guarrasi V., Pecoraro M., Bicchetti M., Messina E., Farina L., Paci P., Catalano C., Panebianco V.
Convolutional neural networks for automated classification of prostate multiparametric magnetic resonance imaging based on image quality. JOURNAL OF MAGNETIC RESONANCE IMAGING 2022: -
Vernocchi P., Ristori M. V., Guerrera S., Guarrasi V., Conte F., Russo A., Lupi E., Albitar-Nehme S., Gardini S., Paci P., Ianiro G., Vicari S., Gasbarrini A., Putignani L.
Gut Microbiota Ecology and Inferred Functions in Children With ASD Compared to Neurotypical Subjects. FRONTIERS IN MICROBIOLOGY 2022: -
Tiberti S., Catozzi C., Croci O., Ballerini M., Cagnina D., Soriani C., Scirgolea C., Gong Z., He J., Macandog A. D., Nabinejad A., Nava Lauson C. B., Quinte' A., Bertalot G., Petz W. L., Ravenda S. P., Licursi V., Paci P., Rasponi M., Rotta L., Fazio N., Ren G., Fumagalli-Romario U., Schaefer M. H., Campaner S., Lugli E., Nezi L., Manzo T.
Fiscon Giulia, Sibilio Pasquale, Funari Alessio, Conte Federica, Paci Paola
Identification of Potential Repurposable Drugs in Alzheimer’s Disease Exploiting a Bioinformatics Analysis. JOURNAL OF PERSONALIZED MEDICINE 2022: -
Conte F., Sibilio P., Grimaldi A. M., Salvatore M., Paci P., Incoronato M.
In silico recognition of a prognostic signature in basal-like breast cancer patients. PLOS ONE 2022: e0264024-
Angiulli F., Colombo T., Fassetti F., Furfaro A., Paci P.
Mining sponge phenomena in RNA expression data. JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY 2022: 2150022-
Tumino N., Besi F., Martini S., Di Pace A. L., Munari E., Quatrini L., Pelosi A., Fiore P. F., Fiscon G., Paci P., Scordamaglia F., Covesnon M. G., Bogina G., Mingari M. C., Moretta L., Vacca P.
Amadio Susanna, Conte Federica, Esposito Giorgia, Fiscon Giulia, Paci Paola, Volonté Cinzia
Repurposing Histaminergic Drugs in Multiple Sclerosis. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES 2022: 1-16
Paci P., Fiscon G.
SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks. BMC BIOINFORMATICS 2022: 1-13
Conte F., Papa F., Paci P., Farina L.
Paci P., Fiscon G.
SWIMmeR: An R-based software to unveiling crucial nodes in complex biological networks. BIOINFORMATICS 2022: 586-588
2021
Conte F., Fiscon G., Sibilio P., Licursi V., Paci P.
An Overview of the computational models dealing with the regulatory ceRNA mechanism and ceRNA deregulation in cancer. Methods in Molecular Biology 2021: 149-164
Fiscon G., Salvadore F., Guarrasi V., Garbuglia A. R., Paci P.
Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19. COMPUTERS IN BIOLOGY AND MEDICINE 2021: 104657-
Sarno F., Benincasa G., List M., Barabasi A. -L., Baumbach J., Ciardiello F., Filetti S., Glass K., Loscalzo J., Marchese C., Maron B. A., Paci P., Parini P., Petrillo E., Silverman E. K., Verrienti A., Altucci L., Napoli C.
Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside. CLINICAL EPIGENETICS 2021: 66-103
Fiscon G., Conte F., Amadio S., Volonte C., Paci P.
Drug Repurposing: A Network-based Approach to Amyotrophic Lateral Sclerosis. NEUROTHERAPEUTICS 2021: -
Paci P., Fiscon G., Conte F., Wang R. -S., Farina L., Loscalzo J.
Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery. NPJ SYSTEMS BIOLOGY AND APPLICATIONS 2021: -
Fiscon G., Pegoraro S., Conte F., Manfioletti G., Paci P.
Sibilio Pasquale, Bini Simone, Fiscon Giulia, Sponziello Marialuisa, Conte Federica, Pecce Valeria, Durante Cosimo, Paci Paola, Falcone Rosa, Norata Giuseppe Danilo, Farina Lorenzo, Verrienti Antonella
In silico drug repurposing in COVID-19. A network-based analysis. BIOMÉDECINE & PHARMACOTHÉRAPIE 2021: 1-10
Salvadore F., Fiscon G., Paci P.
Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy. COMPUTERS IN BIOLOGY AND MEDICINE 2021: 105013-
Panebianco Valeria, Paci Paola, Pecoraro Martina, Conte Federica, Carnicelli Giorgia, Besharat Zein Mersini, Catanzaro Giuseppina, Splendiani Elena, Sciarra Alessandro, Farina Lorenzo, Catalano Carlo, Ferretti Elisabetta
Tumino N., Weber G., Besi F., Del Bufalo F., Bertaina V., Paci P., Quatrini L., Antonucci L., Sinibaldi M., Quintarelli C., Maggi E., De Angelis B., Locatelli F., Moretta L., Vacca P., Caruana I.
Polymorphonuclear myeloid-derived suppressor cells impair the anti-tumor efficacy of gd2.car t-cells in patients with neuroblastoma. JOURNAL OF HEMATOLOGY & ONCOLOGY 2021: 1-7
Fiscon G., Conte F., Farina L., Paci P.
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19. PLOS COMPUTATIONAL BIOLOGY 2021: e1008686-
Fiscon G., Paci P.
SAveRUNNER: an R-based tool for drug repurposing. BMC BIOINFORMATICS 2021: -
Petti M., Verrienti A., Paci P., Farina L.
SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups. COMPUTERS IN BIOLOGY AND MEDICINE 2021: -
Pecce V., Verrienti A., Fiscon G., Sponziello M., Conte F., Abballe L., Durante C., Farina L., Filetti S., Paci P.
The role of FOSL1 in stem-like cell reprogramming processes. SCIENTIFIC REPORTS 2021: 1-11
Bonanomi M., Salmistraro N., Fiscon G., Conte F., Paci P., Bravata V., Forte G. I., Volpari T., Scorza M., Mastroianni F., D'errico S., Avolio E., Piccialli G., Colangelo A. M., Vanoni M., Gaglio D., Alberghina L.
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