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Bioengineering for Molecular Biology and Bioinformatics

 

Gruppi di ricerca

Bioengineering and Bioinformatics

Publications

Pazienti fatti a pezzi 2024
A network approach to define the predictive role of immune profile on tumor response and toxicity of... 2023
A Network of MicroRNAs and mRNAs Involved in Melanosome Maturation and Trafficking Defines the Lower... 2023
An ontology-based approach for modelling and querying Alzheimer’s disease data 2023
Circular RNA mediated gene regulation in human breast cancer: A bioinformatics analysis 2023
Immune-related toxicity and soluble profile in patients affected by solid tumors: a network approach 2023
Immune-related toxicity and soluble profile in patients affected by solid tumors: a network approach 2023
The impact of drug–drug Interactions on the toxicity profile of combined treatment with BRAF and MEK... 2023
A Comparison of Network-Based Methods for Drug Repurposing along with an Application to Human Comple... 2022
A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cance... 2022
Adjuvant epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) for the treatment... 2022
Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and... 2022
Genomic and immune approach in platinum refractory HPV-negative head and neck squamous cell carcinom... 2022
Identification of Potential Repurposable Drugs in Alzheimer’s Disease Exploiting a Bioinformatics An... 2022
Polymorphonuclear Myeloid-Derived Suppressor Cells Are Abundant in Peripheral Blood of Cancer Patien... 2022
Polymorphonuclear Myeloid-Derived Suppressor Cells Are Abundant in Peripheral Blood of Cancer Patien... 2022
Repurposing Histaminergic Drugs in Multiple Sclerosis 2022
SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks 2022
SWIMmeR: An R-based software to unveiling crucial nodes in complex biological networks 2022
SWIMmeR: An R-based software to unveiling crucial nodes in complex biological networks 2022
An Overview of the computational models dealing with the regulatory ceRNA mechanism and ceRNA deregu... 2021
Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of... 2021
Drug Repurposing: A Network-based Approach to Amyotrophic Lateral Sclerosis 2021
Gene co-expression in the interactome: moving from correlation toward causation via an integrated ap... 2021
Gene co-expression in the interactome: moving from correlation toward causation via an integrated ap... 2021
Gene co-expression in the interactome: moving from correlation toward causation via an integrated ap... 2021
Gene network analysis using SWIM reveals interplay between the transcription factor-encoding genes H... 2021
In silico drug repurposing in COVID-19. A network-based analysis 2021
In silico drug repurposing in COVID-19. A network-based analysis 2021
In silico drug repurposing in COVID-19. A network-based analysis 2021
Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in... 2021
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19 2021
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19 2021
SAveRUNNER: an R-based tool for drug repurposing 2021
SAveRUNNER: an R-based tool for drug repurposing 2021
SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression d... 2021
The role of FOSL1 in stem-like cell reprogramming processes 2021
The role of FOSL1 in stem-like cell reprogramming processes 2021
Transcriptomics and metabolomics integration reveals redox-dependent metabolic rewiring in breast ca... 2021
A paradigm shift in medicine: a comprehensive review of network-based approaches 2020
A paradigm shift in medicine: a comprehensive review of network-based approaches 2020
A paradigm shift in medicine: a comprehensive review of network-based approaches 2020
Clinical Multigene Panel Sequencing Identifies Distinct Mutational Association Patterns in Metastati... 2020
Connectivity significance for disease gene prioritization in an expanding universe 2020
Human Papillomavirus infections in cervical samples from HIV-positive women: evaluation of the prese... 2020
Integrated transcriptomic correlation network analysis identifies COPD molecular determinants 2020
Integrated transcriptomic correlation network analysis identifies COPD molecular determinants 2020
Integrated transcriptomic correlation network analysis identifies COPD molecular determinants 2020
Molecular networks in Network Medicine: Development and applications 2020
Molecular networks in Network Medicine: Development and applications 2020
Molecular networks in Network Medicine: Development and applications 2020
Network analysis of gut microbiome and metabolome to discover microbiota-linked biomarkers in patien... 2020
Prostate cancer screening research can benefit from network medicine: an emerging awareness 2020
Prostate cancer screening research can benefit from network medicine: an emerging awareness 2020
Prostate cancer screening research can benefit from network medicine: an emerging awareness 2020
The new paradigm of Network Medicine to analyse breast cancer phenotypes 2020
The new paradigm of Network Medicine to analyse breast cancer phenotypes 2020
A simplified genomic profiling approach predicts outcome in metastatic colorectal cancer 2019
An integrated approach based on EEG signals processing combined with supervised methods to classify... 2019
An ontology-based approach to improve data querying and organization of Alzheimer's Disease dat... 2019
BRAF V600E -mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib... 2019
BRAF V600E -mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib... 2019
BRAF V600E -mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib... 2019
Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties 2019
Identification of Disease-miRNA networks across different cancer types using SWIM 2019
Identification of Disease-miRNA networks across different cancer types using SWIM 2019
JARID1B expression and its function in DNA damage repair are tightly regulated by miRNAs in breast c... 2019
MIENTURNET: An interactive web tool for microRNA-target enrichment and network-based analysis 2019
MIENTURNET: An interactive web tool for microRNA-target enrichment and network-based analysis 2019
Mining clinical and laboratory data of neurodegenerative diseases by Machine Learning: transcriptomi... 2019
miR-96-5p targets PTEN expression affecting radio-chemosensitivity of HNSCC cells 2019
Network Inference and Reconstruction in Bioinformatics 2019
A feature-based integrated scoring scheme for cell cycle-regulated genes prioritization 2018
Combining EEG signal processing with supervised methods for Alzheimer’s patients classification 2018
Computational identification of specific genes for glioblastoma stem-like cells identity 2018
Computational identification of specific genes for glioblastoma stem-like cells identity 2018
Gut microbiota signatures in cystic fibrosis. Loss of host CFTR function drives the microbiota enter... 2018
Interplay between long non-coding RNAs and microRNAs in cancer 2018
Interplay between long non-coding RNAs and microRNAs in cancer 2018
Inverse Problems in Systems Biology: A Critical Review 2018
Multiple-Brain connectivity during third party punishment: an EEG hyperscanning study 2018
Network-based approaches to explore complex biological systems towards network medicine 2018
Network-based approaches to explore complex biological systems towards network medicine 2018
Prediction of response to vemurafenib in BRAF V600E mutant cancers based on a network approach 2018
Prediction of response to vemurafenib in BRAF V600E mutant cancers based on a network approach 2018
SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary... 2018
SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary... 2018
Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled b... 2017
Ripening Transcriptomic Program in Red and White Grapevine Varieties Corre- lates with Berry Skin An... 2017
Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast... 2017
Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast... 2017
String-matching and alignment algorithms for finding motifs in NGS data 2017
SWIM: A computational tool to unveiling crucial nodes in complex biological networks 2017
SWIM: A computational tool to unveiling crucial nodes in complex biological networks 2017
TCGA2BED: Extracting, extending, integrating, and querying The Cancer Genome Atlas 2017
The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the muta... 2017
A perspective on the algorithms predicting and evaluating the RNA secondary structure 2016
A perspective on the algorithms predicting and evaluating the RNA secondary structure 2016
Are proteins just coiled cords? Local and Global analysis of Contact Maps reveals the backbone-depen... 2016
Bioinformatics Algorithms for Knowledge Extraction in Biomedical Data 2016
Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivar... 2016
Integer programming models for feature selection: new extensions and a randomized solution algorithm 2016
Integrated network analysis for studying human lung squamous cell carcinoma 2016
Integrated network analysis for studying human lung squamous cell carcinoma 2016
IRIS-TCGA: An Information Retrieval And Integration System For Cancer Genomic Data 2016
MISSEL: a method to identify a large number of small species-specific genomic subsequences and its a... 2016
Mutant p53 inhibits miRNA biogenesis by interfering with the Microprocessor complex 2016
Ultrasensitive HCV RNA quantification in antiviral triple therapy: new insight on viral clearance dy... 2016
"Classifying DNA barcode multi-locus sequences with feature vectors and supervised approaches... 2015
A new procedure to analyze RNA non-branching structures 2015
A new procedure to analyze RNA non-branching structures 2015
CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules 2015
Classifying DNA barcode multi-locus sequences with feature vectors and supervised approaches 2015
Clustering and Classification Techniques for Gene Expression Profile Pattern Analysis 2015
Clustering and classification techniques for gene expression profiles through pattern analysis. 2015
GELA:a software tool for the analysis of gene expression data. 2015
Kinetic effects and modeling of mRNA turnover 2015
MONSTER v1.1: a tool to extract and search for RNA non-branching structures 2015
MONSTER v1.1: a tool to extract and search for RNA non-branching structures 2015
Phylogenetic and metabolic tracking of gut microbiota during perinatal development. 2015
PVT1: a rising star among oncogenic long non-coding RNAs 2015
The clinical significance of HCV core antigen detection during Telaprevir/Peg-Interferon/Ribavirin t... 2015
A new greedy randomized procedure for the feature selection problem 2014
Alzheimer’s disease patients classification by using EEG signals processing 2014
Alzheimer’s disease patients classification through EEG signals processing 2014
Analysis of microarray and RNA-sequencing gene expression profiles through clustering and classifica... 2014
Computational analysis identifies a sponge interaction network between long non-coding RNAs and mess... 2014
EEG signals analysis to detect Alzheimer's disease patients. 2014
GELA: Gene Expression Logic Analyzer 2014
GIANT: A Cytoscape Plugin for Modular Networks 2014
Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative... 2014
Modules Identification in Protein Structures: The Topological and Geometrical Solutions 2014
MONSTER v1.0: a novel procedure to extract and search for RNA non-branching structures 2014
MONSTER v1.0: a novel procedure to extract and search for RNA non-branching structures 2014
Next generation sequencing reads comparison with an alignment-free distance 2014
On the integration of protein-protein interaction networks with gene expression and 3D structural da... 2014
Progetto per Avvio alla Ricerca 2014 2014
Supervised DNA Barcode species classification: analysis, comparison and results 2014
Development of an algorithm to identify RNA secondary structures. 2013
Development of an algorithm to identify RNA secondary structures. 2013
Identifying Correlations between Chromosomal Proximity of Genes and Distance of Their Products in Pr... 2013
Protein Contact Networks: An Emerging Paradigm in Chemistry 2013
Proteins as Netwoks: Usefulness of Graph Theory in Protein Science 2013
STRUCTURAL ANALYSIS OF LONG NON-CODING RNAs 2013
STRUCTURAL ANALYSIS OF LONG NON-CODING RNAs 2013
SUPERVISED LEARINING MEETS DNA BARCODING SPECIES CLASSIFICATION 2013

Eventi

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Persone

cevallos@diag.uniroma1.it's picture Cevallos Moreno Jesus Fernando
Di Virgilio Valerio
fiscon@dis.uniroma1.it's picture Fiscon Giulia
alberto@dis.uniroma1.it's picture Marchetti-Spaccamela Alberto
Mascolo Davide
paci@diag.uniroma1.it's picture Paci Paola
petti@dis.uniroma1.it's picture Petti Manuela
sibilio@diag.uniroma1.it's picture Sibilio Pasquale

Visiting professors

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